Commits · 20eefdf6ac9f9248202fbfeaeae5aad96f2e4ade · Mirrors / biopet.biopet

27 Jun, 2015 1 commit
- Add missing stats display in Gentrap report · a9beb867
  bow authored Jun 27, 2015
  
  a9beb867
26 Jun, 2015 1 commit
- Initial Gentrap update to use new Metrics module · d6acc80f
  bow authored Jun 26, 2015
  
  d6acc80f
13 Mar, 2015 3 commits
- Flip order or reporting to show later results first · 635feee0
  bow authored Mar 13, 2015
  
  635feee0
- Fix variable name error in report template generator · 81ca7f7e
  bow authored Mar 13, 2015
  
  81ca7f7e
- Add missing CollectRnaSeqMetrics values · 13647e73
  bow authored Mar 13, 2015
  
  13647e73
11 Mar, 2015 1 commit
- Update licenses · 3ec60672
  bow authored Mar 11, 2015
  
  3ec60672
09 Mar, 2015 4 commits
- Report update · 5db19c93
  bow authored Mar 09, 2015
  
  5db19c93
- Finish overview and multi sample section · 7b936070
  bow authored Mar 09, 2015
  
  7b936070
- Update heatmap plotting script · dd7f8389
  bow authored Mar 09, 2015
  
  dd7f8389
- Add initial version table to report[C · b71ac0fe
  bow authored Mar 09, 2015
  
  b71ac0fe
08 Mar, 2015 3 commits
- Fix bug in JAR run caused by copying entire resource folder · e653337b
  bow authored Mar 08, 2015
  
  e653337b
- Update report template · c56d1178
  bow authored Mar 08, 2015
  
  c56d1178
- Add library-level and sample-level RNA metrics to report · 1de28c56
  bow authored Mar 08, 2015
  
  1de28c56
07 Mar, 2015 7 commits
- Initial mapping subsection in report · 8811baae
  bow authored Mar 07, 2015
  
  8811baae
- Avoid repeatedly defining the same latex command · de316ff7
  bow authored Mar 07, 2015
  
  de316ff7
- Use correct sickle value retrieval · 3e956c9c
  bow authored Mar 07, 2015
  
  3e956c9c
- Add all fastqc plots to report · 41883883
  bow authored Mar 07, 2015
  
  41883883
- Add FastQC parser to PDF report template generator · 3c2f3b45
  bow authored Mar 07, 2015
  
  3c2f3b45
- Update report template to output clipped adapter name correctly · 06e9a56a
  bow authored Mar 07, 2015
  
  06e9a56a
- Catch possible exceptions when parsing table for heatmap plotting · 075878b1
  bow authored Mar 07, 2015
  
  075878b1
06 Mar, 2015 2 commits
- Initial report · fb8373ab
  bow authored Mar 06, 2015
  
  fb8373ab
- Add general heatmap plotting fallback when error is encountered · dbc78f53
  bow authored Mar 06, 2015
  
  dbc78f53
05 Mar, 2015 5 commits
- Create fallback plot when data points for heatmap is not enough · 307af384
  bow authored Mar 05, 2015
  
  307af384
- Update heatmap plot sizes · 4f78c3f1
  bow authored Mar 05, 2015
  
  4f78c3f1
- Update heatmap plotting script · 897fbf4e
  bow authored Mar 05, 2015
  
  897fbf4e
- Pass path to logo to template generator · 5acdef81
  bow authored Mar 05, 2015
  
  5acdef81
- Move PDF templates to another directory · 53a6b61e
  bow authored Mar 05, 2015
  
  53a6b61e
04 Mar, 2015 4 commits
- Add PDF report templates · 47bdab9b
  bow authored Mar 04, 2015
  
  47bdab9b
- Modify pdf_report.py with new base layout · 586c9070
  bow authored Mar 04, 2015
  
  586c9070
- Add templates for plotting scripts and their wrappers · 4cd2f2d5
  bow authored Mar 04, 2015
  
  4cd2f2d5
- Add fix_mpileup.py script for VarScan · d50e14ee
  bow authored Mar 04, 2015
  
  d50e14ee
03 Mar, 2015 3 commits
- Add conditional installation of required packages in aggr_base_count.R · ffacca84
  bow authored Mar 03, 2015
  
  ffacca84
- Initial jobs for base counting · ed444315
  bow authored Mar 03, 2015
  
  ed444315
- Move Gentrap-specific scripts and their wrappers to the Gentrap package · 82437aa9
  bow authored Mar 03, 2015
  
  82437aa9