Commits · 10d4ca7915b788feb185fa0b3a177c194f12a9b0 · Mirrors / biopet.biopet

31 Jul, 2017 11 commits
- Started defuturing mappingQuality.ssp · 10d4ca79
  Ruben Vorderman authored Jul 31, 2017
  
  10d4ca79
- Added some scaladocs strings · a868004e
  Ruben Vorderman authored Jul 31, 2017
  
  a868004e
- Defutured rnaHistogramPlot · 09ea599c
  Ruben Vorderman authored Jul 31, 2017
  
  09ea599c
- Defutured wgsHistogramPlot · 505e9ae6
  Ruben Vorderman authored Jul 31, 2017
  
  505e9ae6
- Defutured insertsizeplot · fc410e94
  Ruben Vorderman authored Jul 31, 2017
  
  fc410e94
- Defutured insertsizeplot · dbfdc790
  Ruben Vorderman authored Jul 31, 2017
  
  dbfdc790
- created plotconstructors in bammetrics · 595baf7d
  Ruben Vorderman authored Jul 31, 2017
  
  595baf7d
- defutured mappingqualityreport in Bammetrics · d0d60c78
  Ruben Vorderman authored Jul 31, 2017
  
  d0d60c78
- Untangling of write summaryplotinprogress · 70dd869c
  Ruben Vorderman authored Jul 31, 2017
  
  70dd869c
- Fixed small naming inconsistency · ae8bf475
  Ruben Vorderman authored Jul 31, 2017
  
  ae8bf475
- Defutured alignmentSummary.ssp · f4614adf
  Ruben Vorderman authored Jul 31, 2017
  
  f4614adf
28 Jul, 2017 10 commits
- Merge branch 'develop' into fix-BIOPET-724 · d9383457
  Ruben Vorderman authored Jul 28, 2017
  
  d9383457
- Merge pull request #173 from biopet/fix-BIOPET-760 · f5a3634a
  Peter van 't Hof authored Jul 28, 2017
```
fix centriguge typo
```
  f5a3634a
- centriguge typo · baf0ba53
  Ruben Vorderman authored Jul 28, 2017
  
  baf0ba53
- Qc stats now appear on library page. · 901d5f35
  Ruben Vorderman authored Jul 28, 2017
  
  901d5f35
- Merge pull request #168 from biopet/fix-BIOPET-757 · 6778ef3c
  Peter van 't Hof authored Jul 28, 2017
```
Adding a tool to merge jobreports
```
  6778ef3c
- Merge pull request #170 from biopet/fix-BIOPET-758 · 0ef2b27c
  Peter van 't Hof authored Jul 28, 2017
```
Adding cpu hours to the Queue job report
```
  0ef2b27c
- Merge pull request #172 from biopet/fixing-report-error · 6085a932
  Peter van 't Hof authored Jul 28, 2017
```
Fixing some unsafe code
```
  6085a932
- Merge pull request #169 from biopet/fix-BIOPET-719 · 046b719e
  Peter van 't Hof authored Jul 28, 2017
```
Adding Stringtie to gentrap
```
  046b719e
- Merge pull request #171 from biopet/fix-BIOPET-759 · 702a85e8
  Peter van 't Hof authored Jul 28, 2017
```
Merge stats.json files
```
  702a85e8
- Fixed none appearing kraken plots in centrifuge report · 16b67a44
  Ruben Vorderman authored Jul 28, 2017
  
  16b67a44
27 Jul, 2017 10 commits
- formatted gearsreport · f50e9969
  Ruben Vorderman authored Jul 27, 2017
  
  f50e9969
- Fixed read values used for base plot · 9282df78
  Ruben Vorderman authored Jul 27, 2017
  
  9282df78
- Fixing some unsafe code · 79a8c186
  Peter van 't Hof authored Jul 27, 2017
  
  79a8c186
- Fix names for gearskraken · 41ff7501
  Ruben Vorderman authored Jul 27, 2017
  
  41ff7501
- Name booleans · e8bed330
  Ruben Vorderman authored Jul 27, 2017
  
  e8bed330
- Fix krakenkrona plots · 7bc2f9cb
  Ruben Vorderman authored Jul 27, 2017
  
  7bc2f9cb
- Bug fixes · b7cf21a7
  Ruben Vorderman authored Jul 27, 2017
  
  b7cf21a7
- No overwrite of the total.json anymore · 1a7fd7db
  Peter van 't Hof authored Jul 27, 2017
  
  1a7fd7db
- Remove duplicate tests · 7d0148d6
  Peter van 't Hof authored Jul 27, 2017
  
  7d0148d6
- Merge stats.json files · 1efcf0c5
  Peter van 't Hof authored Jul 27, 2017
  
  1efcf0c5
26 Jul, 2017 9 commits
- Add appropriate Option types for plot generator · 974fceaa
  Ruben Vorderman authored Jul 26, 2017
  
  974fceaa
- Add appropriate some types for plot generator · 268a45a7
  Ruben Vorderman authored Jul 26, 2017
  
  268a45a7
- Add appropriate some types for plot generator · 66d4e1a8
  Ruben Vorderman authored Jul 26, 2017
  
  66d4e1a8
- Fix flexiprep bug and remove import ugliness in gears report · 8078bfbd
  Ruben Vorderman authored Jul 26, 2017
  
  8078bfbd
- Fix flexiprep bug and remove import ugliness in gears report · 618ebeda
  Ruben Vorderman authored Jul 26, 2017
  
  618ebeda
- Add paired parameter to flexiprep{Read,Base}Summary · f1dc8c0f
  Ruben Vorderman authored Jul 26, 2017
  
  f1dc8c0f
- Fixed typo that caused compile error · 9620a19a
  Ruben Vorderman authored Jul 26, 2017
  
  9620a19a
- Edited gearsreport · e937a04d
  Ruben Vorderman authored Jul 26, 2017
  
  e937a04d
- Merge remote-tracking branch 'remotes/origin/develop' into fix-BIOPET-669 · 0a28700b
  Ruben Vorderman authored Jul 26, 2017
```
# Conflicts:
#	biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/report/ReportBuilder.scala
#	flexiprep/src/main/resources/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepBaseSummary.ssp
#	flexiprep/src/main/resources/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepReadSummary.ssp
#	gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsReport.scala
```
  0a28700b