Commits · 074d8d3b8c6b514cca70fd4c1c12e0f31de2a1b5 · Mirrors / biopet.biopet

10 Nov, 2016 7 commits
- Fixed unit tests · 074d8d3b
  Peter van 't Hof authored Nov 10, 2016
  
  074d8d3b
- Merge branch 'develop' into feature-centrifuge_pipe · 8ad8f6c9
  Peter van 't Hof authored Nov 10, 2016
  
  8ad8f6c9
- Merge branch 'feature-full-fastq-to-gears' into 'develop' · 0cea2b66
  Sander Bollen authored Nov 10, 2016
```
Feature full fastq to gears

- Fixes BIOPET-398
- Fixes BIOPET-411
- Fixes BIOPET-414

See merge request !469
```
  0cea2b66
- Merge branch 'feature-sanity_check_outputdir' into 'develop' · 97bdb378
  Sander Bollen authored Nov 10, 2016
```
Added sanity checks for outputDir

fixing: BIOPET-406

See merge request !470
```
  97bdb378
- Switch to fifo pipe · ff5e56e1
  Peter van 't Hof authored Nov 10, 2016
  
  ff5e56e1
- Merge branch 'feature-vcfwithvcf-number' into 'develop' · 1ad5f7a1
  Peter van 't Hof authored Nov 10, 2016
```
Feature vcfwithvcf number

See http://res-jira-app01.researchlumc.nl/browse/BIOPET-384

See merge request !460
```
  1ad5f7a1
- remove redundant imports, add scaladoc and autostyle fixes. · f58ba276
  Sander Bollen authored Nov 10, 2016
  
  f58ba276
09 Nov, 2016 11 commits
- Added thread correction · 785d5a26
  Peter van 't Hof authored Nov 09, 2016
  
  785d5a26
- Added sanity checks for outputDir · fe65dd17
  Peter van 't Hof authored Nov 09, 2016
  
  fe65dd17
- Remove unused imports · af0d5e67
  Peter van 't Hof authored Nov 09, 2016
  
  af0d5e67
- Fixing BIOPET-413 and BIOPET-416 · face5d0e
  Peter van 't Hof authored Nov 09, 2016
  
  face5d0e
- Merge branch 'feature-full-fastq-to-gears' into feature-centrifuge_pipe · 15658350
  Peter van 't Hof authored Nov 09, 2016
  
  15658350
- Fixed unit tests · 6e66f2cc
  Peter van 't Hof authored Nov 09, 2016
  
  6e66f2cc
- add test for numberRoutput · 0065cfb1
  Sander Bollen authored Nov 09, 2016
  
  0065cfb1
- fix fetching of secondary records · daa546d8
  Sander Bollen authored Nov 09, 2016
  
  daa546d8
- Fixed report gearssingle · 0abb015b
  Peter van 't Hof authored Nov 09, 2016
  
  0abb015b
- Merge branch 'fix-delly' into 'develop' · 531c04b7
  Sander Bollen authored Nov 09, 2016
```
Sortvcf on the end



See merge request !468
```
  531c04b7
- Fixed unit tests · cecbc0eb
  Peter van 't Hof authored Nov 09, 2016
  
  cecbc0eb
08 Nov, 2016 4 commits
- Fixed unit tests · 66e90444
  Peter van 't Hof authored Nov 08, 2016
  
  66e90444
- Fixed compile issues · a4553c54
  Peter van 't Hof authored Nov 08, 2016
  
  a4553c54
- Added all arg to centrifuge · 912d98fe
  Peter van 't Hof authored Nov 08, 2016
  
  912d98fe
- Fixed test · 85da3de4
  Peter van 't Hof authored Nov 08, 2016
  
  85da3de4
07 Nov, 2016 7 commits
- adding tests. Individual functions work, but not in the main function? · 77816eac
  Sander Bollen authored Nov 07, 2016
  
  77816eac
- Merge branch 'develop' into feature-vcfwithvcf-number · d12ce44a
  Sander Bollen authored Nov 07, 2016
  
  d12ce44a
- Switch to lazy error · 49b6b782
  Peter van 't Hof authored Nov 07, 2016
  
  49b6b782
- Fixed file names · 608c6349
  Peter van 't Hof authored Nov 07, 2016
  
  608c6349
- Merge branch 'feature-gitlab_issues' into 'develop' · 7ccf5ce0
  Sander Bollen authored Nov 07, 2016
```
Split methods

Split methods that are used in GitlabIssueToJira in sasc-utils

See merge request !461
```
  7ccf5ce0
- Added extra exepction · cf5e59e4
  Peter van 't Hof authored Nov 07, 2016
  
  cf5e59e4
- Fix format · f25519d7
  Peter van 't Hof authored Nov 07, 2016
  
  f25519d7
05 Nov, 2016 1 commit
- Fix BIOPET-410 · 607e9a1f
  Peter van 't Hof authored Nov 05, 2016
  
  607e9a1f
04 Nov, 2016 3 commits
- Fix for BIOPET-398 · 204c72d0
  Peter van 't Hof authored Nov 04, 2016
  
  204c72d0
- Add fix for BIOPET-411 · 8cb19f0f
  Peter van 't Hof authored Nov 04, 2016
  
  8cb19f0f
- Sortvcf on the end · d0a06da2
  Peter van 't Hof authored Nov 04, 2016
  
  d0a06da2
02 Nov, 2016 3 commits
- Merge remote-tracking branch 'remotes/origin/develop' into feature-gitlab_issues · acc50848
  Peter van 't Hof authored Nov 02, 2016
  
  acc50848
- Removed tool · 2b1e8173
  Peter van 't Hof authored Nov 02, 2016
  
  2b1e8173
- Merge branch 'feature-fastq_filter' into 'develop' · 57b31904
  Sander Bollen authored Nov 02, 2016
```
Fix for BIOPET-402



See merge request !467
```
  57b31904
31 Oct, 2016 1 commit
- Added unit test · 942ad5e7
  Peter van 't Hof authored Oct 31, 2016
  
  942ad5e7
28 Oct, 2016 2 commits
- Add a new tool · 77eae709
  Peter van 't Hof authored Oct 28, 2016
  
  77eae709
- Merge branch 'add-cnmops-kopisu' into 'develop' · b6382747
  Peter van 't Hof authored Oct 28, 2016
```
Adding CNmops as method to Kopisu

Depends on #369 and #370 

See merge request !418
```
  b6382747
27 Oct, 2016 1 commit
- use correct location for time limit · b8830d55
  Sander Bollen authored Oct 27, 2016
  
  b8830d55