Commits · 00e9640860b384f986527826c8524296ea3e7dbe · Mirrors / biopet.biopet

26 Nov, 2016 3 commits
- Added main flag to most main jobs · 00e96408
  Peter van 't Hof authored Nov 26, 2016
  
  00e96408
- Adding main job to deps.json · 287c3a7e
  Peter van 't Hof authored Nov 26, 2016
  
  287c3a7e
- Enable deps files always · d0bfad15
  Peter van 't Hof authored Nov 26, 2016
  
  d0bfad15
21 Nov, 2016 6 commits
- Merge branch 'feature_annotation_versions' into 'develop' · 85708a4a
  Sander Bollen authored Nov 21, 2016
```
Fix BIOPET-396



See merge request !465
```
  85708a4a
- Added a bit more docs to arg · 35a30e14
  Peter van 't Hof authored Nov 21, 2016
  
  35a30e14
- Merge branch 'fix-BIOPET-353' into 'develop' · 8beccf35
  Sander Bollen authored Nov 21, 2016
```
Fixing BIOPET-353



See merge request !475
```
  8beccf35
- Explict test noException · b34b4b44
  Peter van 't Hof authored Nov 21, 2016
  
  b34b4b44
- Changed to smaller and readable test · 4fa9758a
  Peter van 't Hof authored Nov 21, 2016
  
  4fa9758a
- Added text to arguments · d44f4f5d
  Peter van 't Hof authored Nov 21, 2016
  
  d44f4f5d
18 Nov, 2016 8 commits
- Fixing BIOPET-353 · c1fb2254
  Peter van 't Hof authored Nov 18, 2016
  
  c1fb2254
- Fixing config files · 91af94b8
  Peter van 't Hof authored Nov 18, 2016
  
  91af94b8
- Fixed test · bf2a496b
  Peter van 't Hof authored Nov 18, 2016
  
  bf2a496b
- Merge remote-tracking branch 'remotes/origin/develop' into feature_annotation_versions · 441b74ac
  Peter van 't Hof authored Nov 18, 2016
  
  441b74ac
- Added unit tests · 1a85e5ca
  Peter van 't Hof authored Nov 18, 2016
  
  1a85e5ca
- Merge branch 'fix-BIOPET-383' into 'develop' · 6f32526d
  Peter van 't Hof authored Nov 18, 2016
```
Fix biopet 383



See merge request !473
```
  6f32526d
- autostyle fixes · 3951e8b8
  Sander Bollen authored Nov 18, 2016
  
  3951e8b8
- Merge branch 'fix-BIOPET-458' into 'develop' · e07f79b0
  Sander Bollen authored Nov 18, 2016
```
Fixed nullpointer



See merge request !474
```
  e07f79b0
17 Nov, 2016 6 commits
- fix tests · b03d3473
  Sander Bollen authored Nov 17, 2016
  
  b03d3473
- Format change · 01d2c652
  Peter van 't Hof authored Nov 17, 2016
  
  01d2c652
- back to exception · 8036de74
  Sander Bollen authored Nov 17, 2016
  
  8036de74
- Merge remote-tracking branch 'remotes/origin/develop' into feature_annotation_versions · ecd397c8
  Peter van 't Hof authored Nov 17, 2016
  
  ecd397c8
- Remove redundant checks · f78b2c09
  Peter van 't Hof authored Nov 17, 2016
  
  f78b2c09
- Fixed nullpointer · 9a4fa988
  Peter van 't Hof authored Nov 17, 2016
  
  9a4fa988
16 Nov, 2016 3 commits
- fix logger.error · f7433283
  Sander Bollen authored Nov 16, 2016
  
  f7433283
- slight improvement of message and autostyle fixes · b1f86146
  Sander Bollen authored Nov 16, 2016
  
  b1f86146
- throw error when no libraries in config · 2546ec16
  Sander Bollen authored Nov 16, 2016
  
  2546ec16
14 Nov, 2016 4 commits
- Merge branch 'fix-jobreport' into 'develop' · 98890af0
  Sander Bollen authored Nov 14, 2016
```
Fix jobreport



See merge request !472
```
  98890af0
- Fix jobreport · f0b84b88
  Peter van 't Hof authored Nov 14, 2016
  
  f0b84b88
- Merge remote-tracking branch 'remotes/origin/develop' into feature_annotation_versions · 475293ea
  Peter van 't Hof authored Nov 14, 2016
```
# Conflicts:
#	biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/Reference.scala
```
  475293ea
- Merge remote-tracking branch 'remotes/origin/fix-generate_indexes' into feature_annotation_versions · d8ffa403
  Peter van 't Hof authored Nov 14, 2016
  
  d8ffa403
11 Nov, 2016 1 commit
- Merge branch 'feature-centrifuge_pipe' into 'develop' · 7fd9c6c6
  Sander Bollen authored Nov 11, 2016
```
Feature centrifuge pipe



See merge request !471
```
  7fd9c6c6
10 Nov, 2016 7 commits
- Fixed unit tests · 074d8d3b
  Peter van 't Hof authored Nov 10, 2016
  
  074d8d3b
- Merge branch 'develop' into feature-centrifuge_pipe · 8ad8f6c9
  Peter van 't Hof authored Nov 10, 2016
  
  8ad8f6c9
- Merge branch 'feature-full-fastq-to-gears' into 'develop' · 0cea2b66
  Sander Bollen authored Nov 10, 2016
```
Feature full fastq to gears

- Fixes BIOPET-398
- Fixes BIOPET-411
- Fixes BIOPET-414

See merge request !469
```
  0cea2b66
- Merge branch 'feature-sanity_check_outputdir' into 'develop' · 97bdb378
  Sander Bollen authored Nov 10, 2016
```
Added sanity checks for outputDir

fixing: BIOPET-406

See merge request !470
```
  97bdb378
- Switch to fifo pipe · ff5e56e1
  Peter van 't Hof authored Nov 10, 2016
  
  ff5e56e1
- Merge branch 'feature-vcfwithvcf-number' into 'develop' · 1ad5f7a1
  Peter van 't Hof authored Nov 10, 2016
```
Feature vcfwithvcf number

See http://res-jira-app01.researchlumc.nl/browse/BIOPET-384

See merge request !460
```
  1ad5f7a1
- remove redundant imports, add scaladoc and autostyle fixes. · f58ba276
  Sander Bollen authored Nov 10, 2016
  
  f58ba276
09 Nov, 2016 2 commits
- Added thread correction · 785d5a26
  Peter van 't Hof authored Nov 09, 2016
  
  785d5a26
- Added sanity checks for outputDir · fe65dd17
  Peter van 't Hof authored Nov 09, 2016
  
  fe65dd17