From fe78d034cbc53dc494e4a82b2bc3604ca69bcb91 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Mon, 17 Nov 2014 09:29:54 +0100
Subject: [PATCH] Changed default fill char
---
.../src/main/scala/nl/lumc/sasc/biopet/utils/VcfUtils.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/utils/VcfUtils.scala b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/utils/VcfUtils.scala
index b0603d14f..d7bc284e1 100644
--- a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/utils/VcfUtils.scala
+++ b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/utils/VcfUtils.scala
@@ -17,7 +17,7 @@ object VcfUtils {
alleles(longestAlleleId)
}
- def fillAllele(bases: String, newSize: Int, fillWith: Char = 'N'): String = {
+ def fillAllele(bases: String, newSize: Int, fillWith: Char = '-'): String = {
bases + (Array.fill[Char](newSize - bases.size)(fillWith)).mkString
}
}
--
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