From fd8a40434d36e3fb5cd8c3ce3c7b4dacd9c8b8e0 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Tue, 3 Feb 2015 17:58:40 +0100
Subject: [PATCH] Fix checks
---
.../main/scala/nl/lumc/sasc/biopet/pipelines/sage/Sage.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/public/sage/src/main/scala/nl/lumc/sasc/biopet/pipelines/sage/Sage.scala b/public/sage/src/main/scala/nl/lumc/sasc/biopet/pipelines/sage/Sage.scala
index c8b5c7030..a614d61d4 100644
--- a/public/sage/src/main/scala/nl/lumc/sasc/biopet/pipelines/sage/Sage.scala
+++ b/public/sage/src/main/scala/nl/lumc/sasc/biopet/pipelines/sage/Sage.scala
@@ -129,7 +129,7 @@ class Sage(val root: Configurable) extends QScript with MultiSampleQScript {
if (!outputDir.endsWith("/")) outputDir += "/"
if (transcriptome.isEmpty && tagsLibrary.isEmpty)
throw new IllegalStateException("No transcriptome or taglib found")
- if (countBed == null && squishedCountBed == null)
+ if (countBed.isEmpty && squishedCountBed.isEmpty)
throw new IllegalStateException("No bedfile supplied, please add a countBed or squishedCountBed")
}
--
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