diff --git a/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/bamstats/BamStats.scala b/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/bamstats/BamStats.scala index 5143c9e0c80aa0c797d0240963040b88d5f4ccff..db9164bb5734a6e195fed27ba6695f71336efb32 100644 --- a/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/bamstats/BamStats.scala +++ b/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/bamstats/BamStats.scala @@ -155,7 +155,7 @@ object BamStats extends ToolCommand { * @return Output stats */ def processThread(scatters: List[BedRecord], bamFile: File): Stats = { - var totalStats = Stats() + val totalStats = Stats() val sortedScatters = scatters.sortBy(_.start) val samReader = SamReaderFactory.makeDefault().open(bamFile) val threadChr = sortedScatters.head.chr @@ -206,7 +206,7 @@ object BamStats extends ToolCommand { * @return Output stats */ def processUnmappedReads(bamFile: File): Stats = { - var stats = Stats() + val stats = Stats() val samReader = SamReaderFactory.makeDefault().open(bamFile) var size = samReader.queryUnmapped().size stats.totalReads += size