From fa935dceebae51387dfc4de1682631ee00fdaa8e Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Sat, 1 Aug 2015 13:24:21 +0200
Subject: [PATCH] Fix executing class
---
.../nl/lumc/sasc/biopet/extensions/picard/MarkDuplicates.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/MarkDuplicates.scala b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/MarkDuplicates.scala
index 310d81d79..33c2a0be9 100644
--- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/MarkDuplicates.scala
+++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/MarkDuplicates.scala
@@ -24,7 +24,7 @@ import org.broadinstitute.gatk.utils.commandline.{ Argument, Input, Output }
/** Extension for picard MarkDuplicates */
class MarkDuplicates(val root: Configurable) extends Picard with Summarizable {
- javaMainClass = new picard.sam.MarkDuplicates().getClass.getName
+ javaMainClass = new picard.sam.markduplicates.MarkDuplicates().getClass.getName
@Input(doc = "The input SAM or BAM files to analyze. Must be coordinate sorted.", required = true)
var input: List[File] = Nil
--
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