diff --git a/.idea/compiler.xml b/.idea/compiler.xml
index 94588dbce1d488f6bcec18cad43bd6126e07cfe2..8e6c219c29c5cc13edb88a29eb13955bc47ee9b5 100644
--- a/.idea/compiler.xml
+++ b/.idea/compiler.xml
@@ -23,6 +23,8 @@
         <outputRelativeToContentRoot value="true" />
         <processorPath useClasspath="true" />
         <module name="BamMetrics" />
+        <module name="BamToBigWig" />
+        <module name="bamtobigwig" />
         <module name="Basty" />
         <module name="BiopetFramework" />
         <module name="BiopetGatkExtensions" />
diff --git a/.idea/encodings.xml b/.idea/encodings.xml
index 308908157d0e7e0ec082d7dd82bba600ca468058..e7e2bb1c70ae10fcffe3cec25427e87b265c15df 100644
--- a/.idea/encodings.xml
+++ b/.idea/encodings.xml
@@ -9,6 +9,7 @@
     <file url="file://$PROJECT_DIR$/protected/biopet-protected-package" charset="UTF-8" />
     <file url="file://$PROJECT_DIR$/public" charset="UTF-8" />
     <file url="file://$PROJECT_DIR$/public/bammetrics" charset="UTF-8" />
+    <file url="file://$PROJECT_DIR$/public/bamtobigwig" charset="UTF-8" />
     <file url="file://$PROJECT_DIR$/public/biopet-framework" charset="UTF-8" />
     <file url="file://$PROJECT_DIR$/public/biopet-public-package" charset="UTF-8" />
     <file url="file://$PROJECT_DIR$/public/flexiprep" charset="UTF-8" />
diff --git a/.idea/misc.xml b/.idea/misc.xml
index e10c5f30b9f7238bda0e66b17b484e193548a75d..59f0fb2d06d72787528f6ab548bac78852125c61 100644
--- a/.idea/misc.xml
+++ b/.idea/misc.xml
@@ -1,5 +1,8 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <project version="4">
+  <component name="EntryPointsManager">
+    <entry_points version="2.0" />
+  </component>
   <component name="MavenProjectsManager">
     <option name="originalFiles">
       <list>
diff --git a/.idea/modules.xml b/.idea/modules.xml
index 7df432bc09c603fd65de3e993ac0b4a44a96aadb..9be48d3f283ff9c5245a85502891e768fc8aad78 100644
--- a/.idea/modules.xml
+++ b/.idea/modules.xml
@@ -3,6 +3,7 @@
   <component name="ProjectModuleManager">
     <modules>
       <module fileurl="file://$PROJECT_DIR$/public/bammetrics/BamMetrics.iml" filepath="$PROJECT_DIR$/public/bammetrics/BamMetrics.iml" />
+      <module fileurl="file://$PROJECT_DIR$/public/bamtobigwig/BamToBigWig.iml" filepath="$PROJECT_DIR$/public/bamtobigwig/BamToBigWig.iml" />
       <module fileurl="file://$PROJECT_DIR$/protected/basty/Basty.iml" filepath="$PROJECT_DIR$/protected/basty/Basty.iml" />
       <module fileurl="file://$PROJECT_DIR$/public/Biopet.iml" filepath="$PROJECT_DIR$/public/Biopet.iml" />
       <module fileurl="file://$PROJECT_DIR$/public/biopet-framework/BiopetFramework.iml" filepath="$PROJECT_DIR$/public/biopet-framework/BiopetFramework.iml" />
diff --git a/.idea/scala_compiler.xml b/.idea/scala_compiler.xml
index 7fb11a07f6f1f6af473bbc77dc7702f2ab2d6a28..6d33bfa3cfbaaace23b234d7ce7f98291a9c1115 100644
--- a/.idea/scala_compiler.xml
+++ b/.idea/scala_compiler.xml
@@ -20,6 +20,7 @@
       <parameter value="$PROJECT_DIR$/public/flexiprep/target/.scala_dependencies" />
       <parameter value="$PROJECT_DIR$/public/mapping/target/.scala_dependencies" />
       <parameter value="$PROJECT_DIR$/protected/biopet-gatk-extensions/target/.scala_dependencies" />
+      <parameter value="$PROJECT_DIR$/public/bamtobigwig/target/.scala_dependencies" />
     </parameters>
   </component>
 </project>
\ No newline at end of file
diff --git a/protected/biopet-protected-package/BiopetProtectedPackage.iml b/protected/biopet-protected-package/BiopetProtectedPackage.iml
index dacf9db7b0e61a7e07c373d6f02242c4ab67dd37..92cffef46bccbbd8760dc18542765a2c2b02780d 100644
--- a/protected/biopet-protected-package/BiopetProtectedPackage.iml
+++ b/protected/biopet-protected-package/BiopetProtectedPackage.iml
@@ -95,7 +95,7 @@
     <orderEntry type="module" module-name="Gentrap" />
     <orderEntry type="module" module-name="Sage" />
     <orderEntry type="module" module-name="Yamsvp" />
-    <orderEntry type="module" module-name="bamtobigwig" />
+    <orderEntry type="module" module-name="BamToBigWig" />
     <orderEntry type="module" module-name="BiopetGatkPipelines" />
     <orderEntry type="module" module-name="BiopetGatkExtensions" />
     <orderEntry type="module" module-name="Basty" />
diff --git a/public/biopet-public-package/BiopetPublicPackage.iml b/public/biopet-public-package/BiopetPublicPackage.iml
index 6f4e49931ddc5d63ca3a2fb841ff97ce367afdc6..3819cdf06e2fea39f199ccb25c4e539d6271e9e3 100644
--- a/public/biopet-public-package/BiopetPublicPackage.iml
+++ b/public/biopet-public-package/BiopetPublicPackage.iml
@@ -94,6 +94,6 @@
     <orderEntry type="module" module-name="Gentrap" />
     <orderEntry type="module" module-name="Sage" />
     <orderEntry type="module" module-name="Yamsvp" />
-    <orderEntry type="module" module-name="bamtobigwig" />
+    <orderEntry type="module" module-name="BamToBigWig" />
   </component>
 </module>
\ No newline at end of file