From f95a231c122810269047b02a5a721ebeb4d5f03c Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Sat, 1 Aug 2015 13:46:17 +0200
Subject: [PATCH] Fix flag default
---
.../nl/lumc/sasc/biopet/extensions/VariantEffectPredictor.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/VariantEffectPredictor.scala b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/VariantEffectPredictor.scala
index 1adfd5431..96ab2c89c 100644
--- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/VariantEffectPredictor.scala
+++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/VariantEffectPredictor.scala
@@ -44,7 +44,7 @@ class VariantEffectPredictor(val root: Configurable) extends BiopetCommandLineFu
var q: Boolean = config("q", default = false)
var offline: Boolean = config("offline", default = false)
var no_progress: Boolean = config("no_progress", default = false)
- var everything: Boolean = config("everything", default = true)
+ var everything: Boolean = config("everything", default = false)
var force: Boolean = config("force", default = false)
var no_stats: Boolean = config("no_stats", default = false)
var stats_text: Boolean = config("stats_text", default = false)
--
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