Commit f76745df authored by bow's avatar bow
Browse files

Update WipeReads usage message

parent b397262c
......@@ -105,7 +105,11 @@ object WipeReads {
| -o,--outputBAM Output BAM file
|optional arguments:
| -f,--minOverlapFraction Minimum overlap of reads and target regions
| -RG,--readGroup Read groups to remove (default: all)
| -Q,--minMapQ Minimum MAPQ value of reads in target region (default: 0)
| --limitToRegion Whether to remove only reads in the target regions and and
| keep the same reads if they map to other regions
| (default: not set)
|This tool will remove BAM records that overlaps a set of given regions.
|By default, if the removed reads are also mapped to other regions outside
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