Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
Mirrors
biopet.biopet
Commits
f7433283
Commit
f7433283
authored
Nov 16, 2016
by
Sander Bollen
Browse files
fix logger.error
parent
b1f86146
Changes
1
Hide whitespace changes
Inline
Side-by-side
biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/MultiSampleQScript.scala
View file @
f7433283
...
...
@@ -143,7 +143,7 @@ trait MultiSampleQScript extends SummaryQScript { qscript: QScript =>
protected
def
libIds
:
Set
[
String
]
=
{
val
ids
=
ConfigUtils
.
getMapFromPath
(
globalConfig
.
map
,
List
(
"samples"
,
sampleId
,
"libraries"
)).
getOrElse
(
Map
()).
keySet
if
(
ids
.
isEmpty
)
{
logger
.
error
(
s
"No libraries found in config for sample $sampleId"
,
IllegalArgumentException
)
logger
.
error
(
s
"No libraries found in config for sample $sampleId"
)
}
ids
}
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment