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biopet.biopet
Commits
f2645096
Commit
f2645096
authored
Jun 08, 2015
by
Peter van 't Hof
Browse files
Fix insertsize table
parent
afbc3f9b
Changes
1
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public/bammetrics/src/main/resources/nl/lumc/sasc/biopet/pipelines/bammetrics/insertSize.ssp
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f2645096
...
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@@ -45,7 +45,7 @@
<th data-sorted="true" data-sorted-direction="ascending">Sample</th>
#if (!sampleLevel) <th>Library</th> #end
#for (field <- fields)
<th>${field}</th>
<th>${field
.replaceAll("_", " ")
}</th>
#end
</tr></thead>
<tbody>
...
...
@@ -65,7 +65,7 @@
val prefixPath = List("samples", sample) ::: (if (libId.isEmpty) Nil else List("libraries", libId)) ::: List("bammetrics", "stats")
val fieldValues = for (field <- fields) yield {
summary.getValue((prefixPath ::: List(
metricsTag, "stats", "i
nsert
_s
ize
_
metrics", field
)):_*
)
summary.getValue((prefixPath ::: List(
"CollectI
nsert
S
ize
Metrics", "
metrics", field
.toUpperCase)):_*).getOrElse(prefixPath ::: metricsTag :: Nil
)
}
}#
#for (value <- fieldValues)
...
...
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