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biopet.biopet
Commits
f249177a
Commit
f249177a
authored
Aug 09, 2016
by
Peter van 't Hof
Browse files
Moved report to a trait so it can be extended by magpie2
parent
8eb7deef
Changes
1
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shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaReport.scala
View file @
f249177a
...
...
@@ -32,7 +32,10 @@ class ShivaReport(val root: Configurable) extends ReportBuilderExtension {
}
/** Object for report generation for Shiva pipeline */
object
ShivaReport
extends
MultisampleMappingReportTrait
{
object
ShivaReport
extends
ShivaReportTrait
/** Trait for report generation for Shiva pipeline, this can be extended */
trait
ShivaReportTrait
extends
MultisampleMappingReportTrait
{
def
variantcallingExecuted
=
summary
.
getValue
(
"shiva"
,
"settings"
,
"multisample_variantcalling"
)
match
{
case
Some
(
true
)
=>
true
...
...
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