Moved report to a trait so it can be extended by magpie2

f249177a · Peter van 't Hof · 8eb7deef · f249177a
Commit f249177a authored Aug 09, 2016 by Peter van 't Hof
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shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaReport.scala ...ala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaReport.scala +4 -1

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--- a/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaReport.scala
+++ b/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaReport.scala
@@ -32,7 +32,10 @@ class ShivaReport(val root: Configurable) extends ReportBuilderExtension {
 }

 /** Object for report generation for Shiva pipeline */
-object ShivaReport extends MultisampleMappingReportTrait {
+object ShivaReport extends ShivaReportTrait
+
+/** Trait for report generation for Shiva pipeline, this can be extended */
+trait ShivaReportTrait extends MultisampleMappingReportTrait  {

  def variantcallingExecuted = summary.getValue("shiva", "settings", "multisample_variantcalling") match {
    case Some(true) => true