From efb74852ae8e45a1d7340eb87bfe033cf78fa006 Mon Sep 17 00:00:00 2001
From: Wai Yi Leung <w.y.leung@lumc.nl>
Date: Tue, 5 Apr 2016 13:53:21 +0200
Subject: [PATCH] set dictRequired to true for this tool
---
.../scala/nl/lumc/sasc/biopet/extensions/picard/SortVcf.scala | 2 ++
1 file changed, 2 insertions(+)
diff --git a/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/SortVcf.scala b/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/SortVcf.scala
index f3500d047..eb36ba9fa 100644
--- a/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/SortVcf.scala
+++ b/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/SortVcf.scala
@@ -34,6 +34,8 @@ class SortVcf(val root: Configurable) extends Picard with Reference {
@Input(doc = "Sequence dictionary to use", required = true)
var sequenceDictionary: File = _
+ override val dictRequired = true
+
override def beforeGraph(): Unit = {
super.beforeGraph()
if (sequenceDictionary == null) sequenceDictionary = referenceDict
--
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