diff --git a/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/SortVcf.scala b/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/SortVcf.scala index f3500d047a01478b8d149484e861092a44b2b6dd..eb36ba9faad4980d28df0308162237b655e7ad4c 100644 --- a/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/SortVcf.scala +++ b/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/SortVcf.scala @@ -34,6 +34,8 @@ class SortVcf(val root: Configurable) extends Picard with Reference { @Input(doc = "Sequence dictionary to use", required = true) var sequenceDictionary: File = _ + override val dictRequired = true + override def beforeGraph(): Unit = { super.beforeGraph() if (sequenceDictionary == null) sequenceDictionary = referenceDict