From efa7c98935e8886f6fb794cd3bfb43b07dc7e28f Mon Sep 17 00:00:00 2001
From: sajvanderzeeuw <sajvanderzeeuw@sasc-sander.lumcnet.prod.intern>
Date: Mon, 10 Nov 2014 10:06:56 +0100
Subject: [PATCH] Fix bedtools_cov_stats.py for plotting in new shark
---
.../nl/lumc/sasc/biopet/scripts/bedtools_cov_stats.py | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/biopet-framework/src/main/scripts/nl/lumc/sasc/biopet/scripts/bedtools_cov_stats.py b/biopet-framework/src/main/scripts/nl/lumc/sasc/biopet/scripts/bedtools_cov_stats.py
index 426ce13d7..dd56e5edc 100755
--- a/biopet-framework/src/main/scripts/nl/lumc/sasc/biopet/scripts/bedtools_cov_stats.py
+++ b/biopet-framework/src/main/scripts/nl/lumc/sasc/biopet/scripts/bedtools_cov_stats.py
@@ -208,9 +208,9 @@ class Coverage(object):
for x in itertools.chain(bp['boxes'], bp['medians'], bp['whiskers'],
bp['caps']):
x.set(color=BLUE, linewidth=1.6)
- bp['fliers'][0].set(color=RED, alpha=0.5)
- bp['fliers'][1].set(color=GREEN, alpha=0.5)
-
+ for flier in bp['fliers']:
+ plt.setp(flier, color='GREEN', alpha=0.5)
+
upper_limit = np.percentile(self.cov_counts, percentile_show)
if x_data:
space = (upper_limit - min(x_data)) / 40
--
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