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biopet.biopet
Commits
ecbd344f
Commit
ecbd344f
authored
Dec 06, 2016
by
Sander Bollen
Browse files
fix some formatting
parent
82856d11
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1
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docs/pipelines/shiva.md
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ecbd344f
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@@ -17,6 +17,9 @@ The pipeline accepts ```.fastq & .bam``` files as input.
*
Freebayes
*
Bcftools
*
Samtools
*
[
FreeC
](
http://boevalab.com/FREEC/
)
*
[
cn.mops
](
http://bioconductor.org/packages/release/bioc/html/cn.mops.html
)
*
[
XHMM
](
http://atgu.mgh.harvard.edu/xhmm/tutorial.shtml
)
----
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@@ -219,6 +222,7 @@ This means this method is not suited for very small target kits.
Please note that it is _not_ possible to run this method without GATK dependencies.
## Example configs
**Config example**
```
yaml
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