Commit ec7fe052 authored by akaljuvee's avatar akaljuvee

-

parent b96d0780
...@@ -90,7 +90,7 @@ class ShivaSvCallingTest extends TestNGSuite with Matchers { ...@@ -90,7 +90,7 @@ class ShivaSvCallingTest extends TestNGSuite with Matchers {
pipeline.init() pipeline.init()
pipeline.script() pipeline.script()
val summaryCallers = pipeline.summarySettings.get("sv_callers") val summaryCallers = pipeline.summarySettings.get("sv_callers").get.asInstanceOf[List[String]]
if (delly) assert(summaryCallers.contains("delly")) if (delly) assert(summaryCallers.contains("delly"))
else assert(!summaryCallers.contains("delly")) else assert(!summaryCallers.contains("delly"))
if (clever) assert(summaryCallers.contains("clever")) if (clever) assert(summaryCallers.contains("clever"))
...@@ -182,7 +182,7 @@ class ShivaSvCallingTest extends TestNGSuite with Matchers { ...@@ -182,7 +182,7 @@ class ShivaSvCallingTest extends TestNGSuite with Matchers {
pipeline.init() pipeline.init()
pipeline.script() pipeline.script()
val summaryCallers = pipeline.summarySettings("sv_callers") val summaryCallers: List[String] = pipeline.summarySettings.get("sv_callers").get.asInstanceOf[List[String]]
assert(summaryCallers.contains("delly")) assert(summaryCallers.contains("delly"))
assert(summaryCallers.contains("clever")) assert(summaryCallers.contains("clever"))
assert(summaryCallers.contains("breakdancer")) assert(summaryCallers.contains("breakdancer"))
......
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