Commit ec59d68a authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Disable gathering

parent dbc5cfbd
......@@ -15,17 +15,17 @@
package nl.lumc.sasc.biopet.core
import{ PrintWriter, File, FileInputStream }
import{File, FileInputStream, PrintWriter}
import nl.lumc.sasc.biopet.utils.Logging
import org.broadinstitute.gatk.utils.commandline.{ Output, Input }
import org.broadinstitute.gatk.utils.commandline.{Gather, Input, Output}
import org.broadinstitute.gatk.utils.runtime.ProcessSettings
import org.ggf.drmaa.JobTemplate
import scala.collection.mutable
import scala.sys.process.{ Process, ProcessLogger }
import scala.sys.process.{Process, ProcessLogger}
import scala.collection.JavaConversions._
/** Biopet command line trait to auto check executable and cluster values */
......@@ -36,6 +36,7 @@ trait BiopetCommandLineFunction extends CommandLineResources { biopetFunction =>
var deps: List[File] = Nil
@Gather(enabled = false)
var outputFiles: List[File] = Nil
var executable: String = _
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment