Commit ec3b2443 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Changed default to UnifiedGenotyper

parent 9fc62d9b
......@@ -15,7 +15,7 @@ class Basty (val root: Configurable) extends QScript with MultiSampleQScript {
class SampleOutput extends AbstractSampleOutput {
}
defaults += "ploidy" -> 1
defaults ++= Map("ploidy" -> 1, "use_haplotypecaller" -> false, "use_unifiedgenotyper" -> true)
var gatkPipeline: GatkPipeline = _
......
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