Commit ec16df2f authored by akaljuvee's avatar akaljuvee

-

parent 78c40fad
......@@ -109,7 +109,13 @@ class ShivaSvCalling(val root: Configurable) extends QScript with SummaryQScript
def summarySettings = Map("sv_callers" -> configCallers.toList)
/** Files for the summary */
def summaryFiles: Map[String, File] = Map("final_mergedvcf" -> (if (inputBams.size > 1) outputMergedVCF else outputMergedVCFbySample.values.head))
def summaryFiles: Map[String, File] = outputMergedVCFbySample ++ (if (inputBams.size > 1) Map("final_mergedvcf" -> outputMergedVCF) else Nil)
}
object ShivaSvCalling extends PipelineCommand
\ No newline at end of file
object ShivaSvCalling extends PipelineCommand
object StructuralVariantType extends Enumeration {
val Deletion = Value("DEL")
val Inversion = Value("INV")
}
\ No newline at end of file
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