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biopet.biopet
Commits
e77963db
Commit
e77963db
authored
Jan 13, 2015
by
Peter van 't Hof
Browse files
Added constructor
parent
f99780c7
Changes
1
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public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/PrefixFastq.scala
View file @
e77963db
...
...
@@ -29,6 +29,13 @@ class PrefixFastq(val root: Configurable) extends BiopetJavaCommandLineFunction
}
object
PrefixFastq
extends
ToolCommand
{
def
apply
(
root
:
Configurable
,
input
:
File
,
outputDir
:
String
)
:
PrefixFastq
=
{
val
prefixFastq
=
new
PrefixFastq
(
root
)
prefixFastq
.
inputFastq
=
input
prefixFastq
.
outputFastq
=
new
File
(
outputDir
,
input
.
getName
+
".prefix.fastq"
)
return
prefixFastq
}
case
class
Args
(
input
:
File
=
null
,
output
:
File
=
null
,
seq
:
String
=
"CATG"
)
extends
AbstractArgs
class
OptParser
extends
AbstractOptParser
{
...
...
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