From e73db7bf26191eabe1c51637f246947b496c5500 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Mon, 9 May 2016 10:04:58 +0200
Subject: [PATCH] Added init test on write deps
---
.../biopet/core/WriteDependenciesTest.scala | 43 +++++++++++++++++++
1 file changed, 43 insertions(+)
create mode 100644 biopet-core/src/test/scala/nl/lumc/sasc/biopet/core/WriteDependenciesTest.scala
diff --git a/biopet-core/src/test/scala/nl/lumc/sasc/biopet/core/WriteDependenciesTest.scala b/biopet-core/src/test/scala/nl/lumc/sasc/biopet/core/WriteDependenciesTest.scala
new file mode 100644
index 000000000..351cc6b6e
--- /dev/null
+++ b/biopet-core/src/test/scala/nl/lumc/sasc/biopet/core/WriteDependenciesTest.scala
@@ -0,0 +1,43 @@
+package nl.lumc.sasc.biopet.core
+
+import java.io.File
+import java.nio.file.Files
+
+import org.broadinstitute.gatk.queue.function.QFunction
+import org.scalatest.Matchers
+import org.scalatest.testng.TestNGSuite
+import org.testng.annotations.Test
+
+import scala.io.Source
+
+/**
+ * Created by pjvanthof on 09/05/16.
+ */
+class WriteDependenciesTest extends TestNGSuite with Matchers {
+
+ import WriteDependenciesTest._
+
+ case class Qfunc(in: Seq[File], out: Seq[File]) extends QFunction {
+ override def inputs = in
+ override def outputs = out
+ override def doneOutputs = out.map(x => new File(x.getParentFile, s".${x.getName}.done"))
+ override def failOutputs = out.map(x => new File(x.getParentFile, s".${x.getName}.fail"))
+ jobOutputFile = new File(out.head + ".out")
+ }
+
+ @Test
+ def test: Unit = {
+ val outputFile = File.createTempFile("deps.", ".json")
+ outputFile.deleteOnExit()
+ WriteDependencies.writeDependencies(Qfunc(file1 :: Nil, file2 :: Nil) :: Qfunc(file2 :: Nil, file3 :: Nil) :: Nil, outputFile)
+ println(Source.fromFile(outputFile).getLines().mkString("\n"))
+ }
+}
+
+object WriteDependenciesTest {
+ val tempDir = Files.createTempDirectory("test").toFile
+ tempDir.deleteOnExit()
+ val file1 = new File(tempDir, "file1.txt")
+ val file2 = new File(tempDir, "file2.txt")
+ val file3 = new File(tempDir, "file3.txt")
+}
\ No newline at end of file
--
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