From e554e59550f6339eb1b28998b907c9d453dc9634 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Tue, 5 Aug 2014 14:47:57 +0200
Subject: [PATCH] Fix on stats output file
---
.../nl/lumc/sasc/biopet/pipelines/flexiprep/Cutadapt.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Cutadapt.scala b/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Cutadapt.scala
index bf7abf3f1..3ceff6bf4 100644
--- a/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Cutadapt.scala
+++ b/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Cutadapt.scala
@@ -64,7 +64,7 @@ object Cutadapt {
val cutadapt = new Cutadapt(root)
cutadapt.fastq_input = input
cutadapt.fastq_output = output
- cutadapt.stats_output = new File(output.getAbsolutePath.substring(0, output.getName.lastIndexOf(".")) + ".stats")
+ cutadapt.stats_output = new File(output.getAbsolutePath.substring(0, output.getAbsolutePath.lastIndexOf(".")) + ".stats")
return cutadapt
}
--
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