From e45d3ce4a8a7fe55a8fedfe8a94feabfbcf5b71a Mon Sep 17 00:00:00 2001
From: Wai Yi Leung <w.y.leung@lumc.nl>
Date: Mon, 14 Mar 2016 12:42:56 +0100
Subject: [PATCH] Simplify the file check (not on md5)
---
.../sasc/biopet/pipelines/flexiprep/flexiprepFastQcPlot.ssp | 5 +----
1 file changed, 1 insertion(+), 4 deletions(-)
diff --git a/public/flexiprep/src/main/resources/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepFastQcPlot.ssp b/public/flexiprep/src/main/resources/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepFastQcPlot.ssp
index cd67a357f..f8dd3e533 100644
--- a/public/flexiprep/src/main/resources/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepFastQcPlot.ssp
+++ b/public/flexiprep/src/main/resources/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepFastQcPlot.ssp
@@ -24,10 +24,7 @@
}
def plotAvailable(read:String) = {
- summary.getLibraryValue(sampleId.get, libId.get, "flexiprep", "files", read, plot, "md5").collect {
- case md5 if md5 != "error_on_capture" => true
- case otherwise => false
- }.getOrElse(false)
+ new File(summary.getLibraryValue(sampleId.get, libId.get, "flexiprep", "files", read, plot, "path").get.toString).exists()
}
}#
--
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