From e3065aec1f45a5e8d98e01c6ed684fc80e77d898 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Wed, 12 Nov 2014 13:00:00 +0100
Subject: [PATCH] Added scala maxthread option
---
.../lumc/sasc/biopet/core/BiopetJavaCommandLineFunction.scala | 2 ++
1 file changed, 2 insertions(+)
diff --git a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetJavaCommandLineFunction.scala b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetJavaCommandLineFunction.scala
index 127f29916..59dfa9d85 100644
--- a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetJavaCommandLineFunction.scala
+++ b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetJavaCommandLineFunction.scala
@@ -9,6 +9,8 @@ trait BiopetJavaCommandLineFunction extends JavaCommandLineFunction with BiopetC
javaGCHeapFreeLimit = config("java_gc_heap_freelimit")
javaGCTimeLimit = config("java_gc_timelimit")
+ override def javaOpts = super.javaOpts + optional("-Dscala.concurrent.context.numThreads=", threads, spaceSeparated = false, escape = false)
+
override def afterGraph {
memoryLimit = config("memory_limit")
}
--
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