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biopet.biopet
Commits
e2b1d5cb
Commit
e2b1d5cb
authored
Dec 06, 2016
by
Peter van 't Hof
Browse files
Fix compile error
parent
7c9fda5b
Changes
1
Hide whitespace changes
Inline
Side-by-side
biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/BamStats.scala
View file @
e2b1d5cb
...
...
@@ -43,7 +43,7 @@ class BamStats(val root: Configurable) extends ToolCommandFunction with Referenc
override
def
beforeGraph
()
{
super
.
beforeGraph
()
deps
:+=
bamFile
.
getAbsolutePath
.
replaceAll
(
".bam$"
,
".bai"
)
deps
:+=
new
File
(
bamFile
.
getAbsolutePath
.
replaceAll
(
".bam$"
,
".bai"
)
)
jobOutputFile
=
new
File
(
outputDir
,
".bamstats.out"
)
if
(
reference
==
null
)
reference
=
referenceFasta
()
}
...
...
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