Fix compile error

e2b1d5cb · Peter van 't Hof · 7c9fda5b · e2b1d5cb
Commit e2b1d5cb authored Dec 06, 2016 by Peter van 't Hof
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biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/BamStats.scala ...scala/nl/lumc/sasc/biopet/extensions/tools/BamStats.scala +1 -1

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--- a/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/BamStats.scala
+++ b/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/BamStats.scala
@@ -43,7 +43,7 @@ class BamStats(val root: Configurable) extends ToolCommandFunction with Referenc

  override def beforeGraph() {
    super.beforeGraph()
-    deps :+= bamFile.getAbsolutePath.replaceAll(".bam$", ".bai")
+    deps :+= new File(bamFile.getAbsolutePath.replaceAll(".bam$", ".bai"))
    jobOutputFile = new File(outputDir, ".bamstats.out")
    if (reference == null) reference = referenceFasta()
  }