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biopet.biopet
Commits
e24802ad
Commit
e24802ad
authored
Apr 07, 2015
by
Peter van 't Hof
Browse files
Fix bug in flexiprep table
parent
5158d4df
Changes
2
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public/flexiprep/src/main/resources/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepSummary.ssp
View file @
e24802ad
...
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@@ -33,7 +33,8 @@
}
}#
<tr><td rowspan="${sampleRowspan}">${sample}</td>
#for (libId <- summary.libraries(sample))
#for (libId <- libs)
#if (libs.head != libId) <tr> #end
#{ val paired = summary.getLibraryValue(sample, libId, "flexiprep", "settings", "paired").getOrElse(false) }#
<td #if (paired == true) rowspan="2" #end>${libId}</td>
<td>R1</td>
...
...
@@ -50,9 +51,8 @@
<td>${summary.getLibraryValue(sample, libId, "flexiprep", "stats", "seqstat_R2_after", "reads", "num_total")} </td>
<td> ${summary.getLibraryValue(sample, libId, "flexiprep", "stats", "seqstat_R2_after", "bases", "num_total")}</td>
#end
</tr>
#end
</tr>
#end
</tbody>
</table>
\ No newline at end of file
public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaReport.scala
View file @
e24802ad
package
nl.lumc.sasc.biopet.pipelines.shiva
import
nl.lumc.sasc.biopet.core.report.
{
MultisampleReportBuilder
,
ReportPage
}
import
nl.lumc.sasc.biopet.core.report.
{
MultisampleReportBuilder
,
ReportPage
}
import
nl.lumc.sasc.biopet.pipelines.flexiprep.FlexiprepReport
/**
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