Commit e0ed3259 authored by Sander Bollen's avatar Sander Bollen
Browse files

Set default h_vmem to 6GB for bedtools coverage (used ~3.5GB in test run)

parent 9d86b1ed
......@@ -46,6 +46,8 @@ class BedtoolsCoverage(val root: Configurable) extends Bedtools {
if (input.getName.endsWith(".bam")) inputTag = "-abam"
override val defaultVmem = "6G"
/** Returns command to execute */
def cmdLine = required(executable) + required("coverage") +
required(inputTag, input) +
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