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biopet.biopet
Commits
e0e20fa1
Commit
e0e20fa1
authored
Oct 06, 2016
by
Sander Bollen
Browse files
limit wall clock time to max 2 hours per default
parent
16684efc
Changes
1
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Inline
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biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/freec/FreeC.scala
View file @
e0e20fa1
...
...
@@ -127,6 +127,11 @@ class FreeC(val root: Configurable) extends BiopetCommandLineFunction with Refer
override
def
defaultThreads
=
4
override
def
defaultCoreMemory
=
50
// wallclock time limit in seconds
var
wallClockTimeLimit
:
Int
=
config
(
"wall_time_limit"
,
namespace
=
"freec"
,
default
=
7200
)
jobNativeArgs
=
jobNativeArgs
.
toList
:::
List
(
s
"-l h_rt=$wallClockTimeLimit"
)
private
var
configFile
:
File
=
_
override
def
beforeGraph
{
...
...
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