From df55de18ed3936327d223ffdd75afe778bbbdcb4 Mon Sep 17 00:00:00 2001
From: Wai Yi Leung <w.y.leung@lumc.nl>
Date: Fri, 13 Feb 2015 17:27:06 +0100
Subject: [PATCH] Rename and use string formatting
---
.../src/main/scala/nl/lumc/sasc/biopet/extensions/Ln.scala | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Ln.scala b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Ln.scala
index 4bcaea82d..c1384da8e 100644
--- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Ln.scala
+++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Ln.scala
@@ -33,7 +33,8 @@ class Ln(val root: Configurable) extends InProcessFunction with Configurable {
var relative: Boolean = true
override def freezeFieldValues(): Unit = {
- jobOutputFile = new File(out.getParent + File.separator + "." + out.getName + "." + this.analysisName + ".out")
+ val outLog: String = ".%s.%s.out".format(out.getName, analysisName)
+ jobOutputFile = new File(out.getAbsoluteFile.getParentFile, outLog)
super.freezeFieldValues()
}
--
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