From df207f04b47f1191d997f12babf3eed51c44efa4 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Tue, 17 Feb 2015 15:58:23 +0100
Subject: [PATCH] Fix sickle in unit tests

---
 .../nl/lumc/sasc/biopet/pipelines/flexiprep/FlexiprepTest.scala | 2 +-
 .../nl/lumc/sasc/biopet/pipelines/mapping/MappingTest.scala     | 1 -
 2 files changed, 1 insertion(+), 2 deletions(-)

diff --git a/public/flexiprep/src/test/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/FlexiprepTest.scala b/public/flexiprep/src/test/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/FlexiprepTest.scala
index c0285f967..eb85e23f0 100644
--- a/public/flexiprep/src/test/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/FlexiprepTest.scala
+++ b/public/flexiprep/src/test/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/FlexiprepTest.scala
@@ -10,7 +10,7 @@ import org.scalatest.testng.TestNGSuite
 import org.testng.annotations.{ AfterClass, DataProvider, Test }
 
 import nl.lumc.sasc.biopet.core.config.Config
-import nl.lumc.sasc.biopet.extensions.{ Gzip, Zcat }
+import nl.lumc.sasc.biopet.extensions.{ Sickle, Gzip, Zcat }
 import nl.lumc.sasc.biopet.tools.FastqSync
 import nl.lumc.sasc.biopet.utils.ConfigUtils
 
diff --git a/public/mapping/src/test/scala/nl/lumc/sasc/biopet/pipelines/mapping/MappingTest.scala b/public/mapping/src/test/scala/nl/lumc/sasc/biopet/pipelines/mapping/MappingTest.scala
index a8e63b826..e550fac17 100644
--- a/public/mapping/src/test/scala/nl/lumc/sasc/biopet/pipelines/mapping/MappingTest.scala
+++ b/public/mapping/src/test/scala/nl/lumc/sasc/biopet/pipelines/mapping/MappingTest.scala
@@ -15,7 +15,6 @@ import nl.lumc.sasc.biopet.extensions.picard.{ MergeSamFiles, AddOrReplaceReadGr
 import nl.lumc.sasc.biopet.extensions._
 import nl.lumc.sasc.biopet.pipelines.flexiprep.Cutadapt
 import nl.lumc.sasc.biopet.pipelines.flexiprep.Fastqc
-import nl.lumc.sasc.biopet.pipelines.flexiprep.Sickle
 import nl.lumc.sasc.biopet.pipelines.flexiprep._
 import nl.lumc.sasc.biopet.tools.FastqSync
 import nl.lumc.sasc.biopet.utils.ConfigUtils
-- 
GitLab