Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
Mirrors
biopet.biopet
Commits
def28b47
Commit
def28b47
authored
Nov 22, 2014
by
Peter van 't Hof
Browse files
Fix on exe
parent
956f1d84
Changes
2
Hide whitespace changes
Inline
Side-by-side
protected/biopet-protected-package/src/main/scala/nl/lumc/sasc/biopet/core/BiopetExecutableProtected.scala
View file @
def28b47
package
nl.lumc.sasc.biopet.core
object
BiopetExecutableProtected
extends
BiopetExecutable
{
val
pipelines
:
List
[
MainCommand
]
=
List
(
lazy
val
pipelines
:
List
[
MainCommand
]
=
List
(
nl
.
lumc
.
sasc
.
biopet
.
pipelines
.
flexiprep
.
Flexiprep
,
nl
.
lumc
.
sasc
.
biopet
.
pipelines
.
mapping
.
Mapping
,
nl
.
lumc
.
sasc
.
biopet
.
pipelines
.
gentrap
.
Gentrap
,
...
...
@@ -16,7 +16,7 @@ object BiopetExecutableProtected extends BiopetExecutable {
nl
.
lumc
.
sasc
.
biopet
.
pipelines
.
basty
.
Basty
,
nl
.
lumc
.
sasc
.
biopet
.
pipelines
.
yamsvp
.
Yamsvp
)
val
tools
:
List
[
MainCommand
]
=
List
(
lazy
val
tools
:
List
[
MainCommand
]
=
List
(
nl
.
lumc
.
sasc
.
biopet
.
tools
.
WipeReads
,
nl
.
lumc
.
sasc
.
biopet
.
tools
.
ExtractAlignedFastq
,
nl
.
lumc
.
sasc
.
biopet
.
tools
.
BiopetFlagstat
,
...
...
public/biopet-public-package/src/main/scala/nl/lumc/sasc/biopet/core/BiopetExecutablePublic.scala
View file @
def28b47
package
nl.lumc.sasc.biopet.core
object
BiopetExecutablePublic
extends
BiopetExecutable
{
val
pipelines
:
List
[
MainCommand
]
=
List
(
lazy
val
pipelines
:
List
[
MainCommand
]
=
List
(
nl
.
lumc
.
sasc
.
biopet
.
pipelines
.
flexiprep
.
Flexiprep
,
nl
.
lumc
.
sasc
.
biopet
.
pipelines
.
mapping
.
Mapping
,
nl
.
lumc
.
sasc
.
biopet
.
pipelines
.
gentrap
.
Gentrap
,
...
...
@@ -9,7 +9,7 @@ object BiopetExecutablePublic extends BiopetExecutable {
nl
.
lumc
.
sasc
.
biopet
.
pipelines
.
sage
.
Sage
,
nl
.
lumc
.
sasc
.
biopet
.
pipelines
.
yamsvp
.
Yamsvp
)
val
tools
:
List
[
MainCommand
]
=
List
(
lazy
val
tools
:
List
[
MainCommand
]
=
List
(
nl
.
lumc
.
sasc
.
biopet
.
tools
.
WipeReads
,
nl
.
lumc
.
sasc
.
biopet
.
tools
.
ExtractAlignedFastq
,
nl
.
lumc
.
sasc
.
biopet
.
tools
.
BiopetFlagstat
,
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment