From deeadccac0b55b5d3a1950601d913d66a8e8620b Mon Sep 17 00:00:00 2001
From: bow <bow@bow.web.id>
Date: Fri, 31 Oct 2014 16:22:28 +0100
Subject: [PATCH] Add test for unexpected interval file
---
.../main/scala/nl/lumc/sasc/biopet/tools/WipeReads.scala | 2 +-
.../nl/lumc/sasc/biopet/tools/WipeReadsUnitTest.scala | 7 +++++++
2 files changed, 8 insertions(+), 1 deletion(-)
diff --git a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/WipeReads.scala b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/WipeReads.scala
index 599d12f5b..3b921db8f 100644
--- a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/WipeReads.scala
+++ b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/WipeReads.scala
@@ -450,4 +450,4 @@ object WipeReads extends ToolCommand {
commandArgs.filteredOutBam.map(x => prepOutBam(x, commandArgs.inputBam, writeIndex = !commandArgs.noMakeIndex))
)
}
-}
+}
\ No newline at end of file
diff --git a/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/WipeReadsUnitTest.scala b/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/WipeReadsUnitTest.scala
index 8b7cb2ac8..3929f13f8 100644
--- a/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/WipeReadsUnitTest.scala
+++ b/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/WipeReadsUnitTest.scala
@@ -125,6 +125,13 @@ class WipeReadsUnitTest extends TestNGSuite with MockitoSugar with Matchers {
val RefFlatFile1 = new File(resourcePath("/rrna01.refFlat"))
val GtfFile1 = new File(resourcePath("/rrna01.gtf"))
+ @Test def testMakeIntervalFromUnknown() = {
+ val thrown = intercept[IllegalArgumentException] {
+ makeIntervalFromFile(new File("false.bam"))
+ }
+ thrown.getMessage should ===("Unexpected interval file type: false.bam")
+ }
+
@Test def testMakeIntervalFromBed() = {
val intervals: List[Interval] = makeIntervalFromFile(BedFile1)
intervals.length shouldBe 3
--
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