From de498a269e8da85aeb79a4fc6d7095aca0ba3400 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Tue, 20 May 2014 14:35:31 +0200
Subject: [PATCH] - fixed thread option for star
---
.../src/main/java/nl/lumc/sasc/biopet/wrappers/Star.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/biopet-framework/src/main/java/nl/lumc/sasc/biopet/wrappers/Star.scala b/biopet-framework/src/main/java/nl/lumc/sasc/biopet/wrappers/Star.scala
index 605ea9f5e..f898b6676 100644
--- a/biopet-framework/src/main/java/nl/lumc/sasc/biopet/wrappers/Star.scala
+++ b/biopet-framework/src/main/java/nl/lumc/sasc/biopet/wrappers/Star.scala
@@ -43,7 +43,7 @@ class Star(private var globalConfig: Config) extends CommandLineFunction {
cmd += required("--genomeDir", genomeDir) +
required("--readFilesIn", R1) + optional(R2)
}
- cmd += optional("-runThreadN", nCoresRequest)
+ cmd += optional("--runThreadN", nCoresRequest)
return cmd
}
--
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