diff --git a/biopet-framework/src/main/java/nl/lumc/sasc/biopet/wrappers/Star.scala b/biopet-framework/src/main/java/nl/lumc/sasc/biopet/wrappers/Star.scala index 605ea9f5ea66811cc24e105d0655cf83b8885dba..f898b667606ffc6054abd37847762c31c0306fcf 100644 --- a/biopet-framework/src/main/java/nl/lumc/sasc/biopet/wrappers/Star.scala +++ b/biopet-framework/src/main/java/nl/lumc/sasc/biopet/wrappers/Star.scala @@ -43,7 +43,7 @@ class Star(private var globalConfig: Config) extends CommandLineFunction { cmd += required("--genomeDir", genomeDir) + required("--readFilesIn", R1) + optional(R2) } - cmd += optional("-runThreadN", nCoresRequest) + cmd += optional("--runThreadN", nCoresRequest) return cmd }