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Commit de357a4f authored by Peter van 't Hof's avatar Peter van 't Hof
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Fixed typo

parent edb2c740
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Showing with 7 additions and 7 deletions
biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/bamstats/Stats.scala
View file @ de357a4f
......@@ -62,13 +62,13 @@ case class Stats(flagstat: FlagstatCollector = new FlagstatCollector(),
def toSummaryMap = {
Map(
"flagstats" -> flagstat.toSummaryMap,
"mapping_quality" -> Map("histrogram" -> mappingQualityHistogram.toSummaryMap, "general" -> mappingQualityHistogram.aggregateStats),
"insert_size" -> Map("histrogram" -> insertSizeHistogram.toSummaryMap, "general" -> insertSizeHistogram.aggregateStats),
"clipping" -> Map("histrogram" -> clippingHistogram.toSummaryMap, "general" -> clippingHistogram.aggregateStats),
"left_clipping" -> Map("histrogram" -> leftClippingHistogram.toSummaryMap, "general" -> leftClippingHistogram.aggregateStats),
"right_clipping" -> Map("histrogram" -> rightClippingHistogram.toSummaryMap, "general" -> rightClippingHistogram.aggregateStats),
"5_prime_clipping" -> Map("histrogram" -> _5_ClippingHistogram.toSummaryMap, "general" -> _5_ClippingHistogram.aggregateStats),
"3_prime_clipping" -> Map("histrogram" -> _3_ClippingHistogram.toSummaryMap, "general" -> _3_ClippingHistogram.aggregateStats)
"mapping_quality" -> Map("histogram" -> mappingQualityHistogram.toSummaryMap, "general" -> mappingQualityHistogram.aggregateStats),
"insert_size" -> Map("histogram" -> insertSizeHistogram.toSummaryMap, "general" -> insertSizeHistogram.aggregateStats),
"clipping" -> Map("histogram" -> clippingHistogram.toSummaryMap, "general" -> clippingHistogram.aggregateStats),
"left_clipping" -> Map("histogram" -> leftClippingHistogram.toSummaryMap, "general" -> leftClippingHistogram.aggregateStats),
"right_clipping" -> Map("histogram" -> rightClippingHistogram.toSummaryMap, "general" -> rightClippingHistogram.aggregateStats),
"5_prime_clipping" -> Map("histogram" -> _5_ClippingHistogram.toSummaryMap, "general" -> _5_ClippingHistogram.aggregateStats),
"3_prime_clipping" -> Map("histogram" -> _3_ClippingHistogram.toSummaryMap, "general" -> _3_ClippingHistogram.aggregateStats)
)
}
}
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