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biopet.biopet
Commits
de357a4f
Commit
de357a4f
authored
Jan 04, 2017
by
Peter van 't Hof
Browse files
Fixed typo
parent
edb2c740
Changes
1
Hide whitespace changes
Inline
Side-by-side
biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/bamstats/Stats.scala
View file @
de357a4f
...
...
@@ -62,13 +62,13 @@ case class Stats(flagstat: FlagstatCollector = new FlagstatCollector(),
def
toSummaryMap
=
{
Map
(
"flagstats"
->
flagstat
.
toSummaryMap
,
"mapping_quality"
->
Map
(
"hist
r
ogram"
->
mappingQualityHistogram
.
toSummaryMap
,
"general"
->
mappingQualityHistogram
.
aggregateStats
),
"insert_size"
->
Map
(
"hist
r
ogram"
->
insertSizeHistogram
.
toSummaryMap
,
"general"
->
insertSizeHistogram
.
aggregateStats
),
"clipping"
->
Map
(
"hist
r
ogram"
->
clippingHistogram
.
toSummaryMap
,
"general"
->
clippingHistogram
.
aggregateStats
),
"left_clipping"
->
Map
(
"hist
r
ogram"
->
leftClippingHistogram
.
toSummaryMap
,
"general"
->
leftClippingHistogram
.
aggregateStats
),
"right_clipping"
->
Map
(
"hist
r
ogram"
->
rightClippingHistogram
.
toSummaryMap
,
"general"
->
rightClippingHistogram
.
aggregateStats
),
"5_prime_clipping"
->
Map
(
"hist
r
ogram"
->
_5_ClippingHistogram
.
toSummaryMap
,
"general"
->
_5_ClippingHistogram
.
aggregateStats
),
"3_prime_clipping"
->
Map
(
"hist
r
ogram"
->
_3_ClippingHistogram
.
toSummaryMap
,
"general"
->
_3_ClippingHistogram
.
aggregateStats
)
"mapping_quality"
->
Map
(
"histogram"
->
mappingQualityHistogram
.
toSummaryMap
,
"general"
->
mappingQualityHistogram
.
aggregateStats
),
"insert_size"
->
Map
(
"histogram"
->
insertSizeHistogram
.
toSummaryMap
,
"general"
->
insertSizeHistogram
.
aggregateStats
),
"clipping"
->
Map
(
"histogram"
->
clippingHistogram
.
toSummaryMap
,
"general"
->
clippingHistogram
.
aggregateStats
),
"left_clipping"
->
Map
(
"histogram"
->
leftClippingHistogram
.
toSummaryMap
,
"general"
->
leftClippingHistogram
.
aggregateStats
),
"right_clipping"
->
Map
(
"histogram"
->
rightClippingHistogram
.
toSummaryMap
,
"general"
->
rightClippingHistogram
.
aggregateStats
),
"5_prime_clipping"
->
Map
(
"histogram"
->
_5_ClippingHistogram
.
toSummaryMap
,
"general"
->
_5_ClippingHistogram
.
aggregateStats
),
"3_prime_clipping"
->
Map
(
"histogram"
->
_3_ClippingHistogram
.
toSummaryMap
,
"general"
->
_3_ClippingHistogram
.
aggregateStats
)
)
}
}
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