From dd9a7060aee4bcd7fa5d00a1555e05eb68277ccf Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Tue, 19 Jan 2016 13:46:59 +0100
Subject: [PATCH] Added varscan_jar to test config
---
.../sasc/biopet/pipelines/shiva/ShivaVariantcallingTest.scala | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/public/shiva/src/test/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaVariantcallingTest.scala b/public/shiva/src/test/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaVariantcallingTest.scala
index db6337765..2cf338385 100644
--- a/public/shiva/src/test/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaVariantcallingTest.scala
+++ b/public/shiva/src/test/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaVariantcallingTest.scala
@@ -133,6 +133,7 @@ object ShivaVariantcallingTest {
"freebayes" -> Map("exe" -> "test"),
"md5sum" -> Map("exe" -> "test"),
"bgzip" -> Map("exe" -> "test"),
- "tabix" -> Map("exe" -> "test")
+ "tabix" -> Map("exe" -> "test"),
+ "varscan_jar" -> "test"
)
}
\ No newline at end of file
--
GitLab