Commit dc6dc49c authored by Peter van 't Hof's avatar Peter van 't Hof Committed by GitHub
Browse files

Merge pull request #35 from biopet/fix-BIOPET-538

Test fail on format/git issues
parents 527d43b8 1edaf174
...@@ -22,6 +22,10 @@ node('local') { ...@@ -22,6 +22,10 @@ node('local') {
junit '*/target/surefire-reports/*.xml' junit '*/target/surefire-reports/*.xml'
} }
stage('Check git on changes') {
sh 'if [ $(git diff | wc -l) -eq 0 ]; then true; else echo "[ERROR] Git is not clean anymore after build"; git diff; echo "[ERROR] This might be caused by reformated code, if so run maven locally"; false; fi'
}
stage('Check Documentation') { stage('Check Documentation') {
sh 'mkdocs build --clean --strict' sh 'mkdocs build --clean --strict'
} }
......
...@@ -15,10 +15,10 @@ ...@@ -15,10 +15,10 @@
package nl.lumc.sasc.biopet.tools package nl.lumc.sasc.biopet.tools
import java.io.File import java.io.File
import java.nio.file.{Files, Paths} import java.nio.file.{ Files, Paths }
import htsjdk.variant.vcf.VCFFileReader import htsjdk.variant.vcf.VCFFileReader
import nl.lumc.sasc.biopet.tools.vcfstats.{SampleStats, SampleToSampleStats, Stats, VcfStats} import nl.lumc.sasc.biopet.tools.vcfstats.{ SampleStats, SampleToSampleStats, Stats, VcfStats }
import nl.lumc.sasc.biopet.tools.vcfstats.VcfStats._ import nl.lumc.sasc.biopet.tools.vcfstats.VcfStats._
import org.scalatest.Matchers import org.scalatest.Matchers
import org.scalatest.testng.TestNGSuite import org.scalatest.testng.TestNGSuite
...@@ -170,7 +170,7 @@ class VcfStatsTest extends TestNGSuite with Matchers { ...@@ -170,7 +170,7 @@ class VcfStatsTest extends TestNGSuite with Matchers {
val vcf = resourcePath("/chrQ.vcf.gz") val vcf = resourcePath("/chrQ.vcf.gz")
val ref = resourcePath("/fake_chrQ.fa") val ref = resourcePath("/fake_chrQ.fa")
an [IllegalArgumentException] should be thrownBy main(Array("-I", vcf, "-R", ref, "-o", tmp.toAbsolutePath.toString)) an[IllegalArgumentException] should be thrownBy main(Array("-I", vcf, "-R", ref, "-o", tmp.toAbsolutePath.toString))
} }
@Test @Test
......
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