Merge pull request #35 from biopet/fix-BIOPET-538

Test fail on format/git issues

Jenkinsfile

@@ -22,6 +22,10 @@ node('local') {
                 junit '*/target/surefire-reports/*.xml'
             }
 
+            stage('Check git on changes') {
+                sh 'if [ $(git diff | wc -l) -eq 0 ]; then true; else echo "[ERROR] Git is not clean anymore after build"; git diff; echo "[ERROR] This might be caused by reformated code, if so run maven locally"; false; fi'
+            }
+
             stage('Check Documentation') {
                 sh 'mkdocs build --clean --strict'
             }

biopet-tools/src/test/scala/nl/lumc/sasc/biopet/tools/VcfStatsTest.scala

@@ -15,10 +15,10 @@
 package nl.lumc.sasc.biopet.tools
 
 import java.io.File
-import java.nio.file.{Files, Paths}
+import java.nio.file.{ Files, Paths }
 
 import htsjdk.variant.vcf.VCFFileReader
-import nl.lumc.sasc.biopet.tools.vcfstats.{SampleStats, SampleToSampleStats, Stats, VcfStats}
+import nl.lumc.sasc.biopet.tools.vcfstats.{ SampleStats, SampleToSampleStats, Stats, VcfStats }
 import nl.lumc.sasc.biopet.tools.vcfstats.VcfStats._
 import org.scalatest.Matchers
 import org.scalatest.testng.TestNGSuite
@@ -170,7 +170,7 @@ class VcfStatsTest extends TestNGSuite with Matchers {
     val vcf = resourcePath("/chrQ.vcf.gz")
     val ref = resourcePath("/fake_chrQ.fa")
 
-    an [IllegalArgumentException] should be thrownBy main(Array("-I", vcf, "-R", ref, "-o", tmp.toAbsolutePath.toString))
+    an[IllegalArgumentException] should be thrownBy main(Array("-I", vcf, "-R", ref, "-o", tmp.toAbsolutePath.toString))
   }
 
   @Test