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biopet.biopet
Commits
dbda4819
Commit
dbda4819
authored
Sep 20, 2016
by
Peter van 't Hof
Browse files
Fix command
parent
c0f8f2a3
Changes
1
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Side-by-side
biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/centrifuge/Centrifuge.scala
View file @
dbda4819
...
...
@@ -44,7 +44,7 @@ class Centrifuge(val root: Configurable) extends BiopetCommandLineFunction with
*/
def
cmdLine
:
String
=
executable
+
//TODO: Options
optional
(
"--threads"
,
threads
)
optional
(
"--threads"
,
threads
)
+
required
(
"-x"
,
index
)
+
(
inputR2
match
{
case
Some
(
r2
)
=>
required
(
"-1"
,
inputR1
)
+
required
(
"-2"
,
r2
)
...
...
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