diff --git a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Fastqc.scala b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Fastqc.scala index 5d8862e7c038eefea1adb9bff26869599f9f13a8..fed5e514be34618f41d2e8348eba6d15e67fab29 100644 --- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Fastqc.scala +++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Fastqc.scala @@ -71,7 +71,7 @@ class Fastqc(val root: Configurable) extends BiopetCommandLineFunction { // otherwise, check if adapters are already present (depending on FastQC version) case None => val defaultAdapters = getVersion match { - case "v0.11.2" => Some(new File(fastqcDir + "/Configuration/adapter_list.txt")) + case "v0.11.2" => Option(new File(fastqcDir + "/Configuration/adapter_list.txt")) case _ => None } defaultAdapters.collect { case adp => config("adapters", default = adp) }