From da66790f7e8b6963004e23756bbb673840b2b4d7 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Tue, 20 May 2014 14:12:08 +0200
Subject: [PATCH] - fixed namespaceing in AddOrReplaceReadGroups
---
.../java/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/mapping/src/main/java/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala b/mapping/src/main/java/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala
index a2f59eca1..2e07f081b 100644
--- a/mapping/src/main/java/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala
+++ b/mapping/src/main/java/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala
@@ -118,7 +118,8 @@ class Mapping(private var globalConfig: Config) extends QScript {
this.memoryLimit = 2
this.nCoresRequest = 2
this.jobResourceRequests :+= "h_vmem=4G"
-
+
+ this.RGID = qscript.RGID
this.RGLB = qscript.RGLB
this.RGPL = qscript.RGPL
this.RGPU = qscript.RGPU
--
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