From d9e2a1e238e77bbc4333015ee0268f275a31a711 Mon Sep 17 00:00:00 2001
From: Sander van der Zeeuw <s.a.j.van_der_zeeuw@lumc.nl>
Date: Wed, 11 Mar 2015 13:33:15 +0100
Subject: [PATCH] changed .bigwig extension to .bw

---
 .../nl/lumc/sasc/biopet/pipelines/bamtobigwig/Bam2Wig.scala     | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/public/bam2wig/src/main/scala/nl/lumc/sasc/biopet/pipelines/bamtobigwig/Bam2Wig.scala b/public/bam2wig/src/main/scala/nl/lumc/sasc/biopet/pipelines/bamtobigwig/Bam2Wig.scala
index 8c1f543bf..4b43bd5fd 100644
--- a/public/bam2wig/src/main/scala/nl/lumc/sasc/biopet/pipelines/bamtobigwig/Bam2Wig.scala
+++ b/public/bam2wig/src/main/scala/nl/lumc/sasc/biopet/pipelines/bamtobigwig/Bam2Wig.scala
@@ -38,7 +38,7 @@ class Bam2Wig(val root: Configurable) extends QScript with BiopetQScript {
     val wigToBigWig = new WigToBigWig(this)
     wigToBigWig.inputWigFile = igvCount.wig.get
     wigToBigWig.inputChromSizesFile = bs.chromSizesFile
-    wigToBigWig.outputBigWig = swapExt(outputDir, bamFile, ".bam", ".bigwig")
+    wigToBigWig.outputBigWig = swapExt(outputDir, bamFile, ".bam", ".bw")
     add(wigToBigWig)
   }
 }
-- 
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