Commit d98d49d6 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fixed args

parent 02729a98
......@@ -46,7 +46,7 @@ class DownloadNcbiAssembly(val root: Configurable) extends ToolCommandFunction {
required("--report", outputReport) +
required("-o", output) +
optional("--nameHeader", nameHeader) +
repeat("--mustHaveOne", mustHaveOne) +
repeat("--mustNotHave", mustNotHave)
repeat("--mustHaveOne:", mustHaveOne, spaceSeparated = false) +
repeat("--mustNotHave:", mustNotHave, spaceSeparated = false)
}
......@@ -17,8 +17,8 @@ package nl.lumc.sasc.biopet.pipelines.generateindexes
import java.util
import nl.lumc.sasc.biopet.core.extensions.Md5sum
import nl.lumc.sasc.biopet.core.{BiopetQScript, PipelineCommand}
import nl.lumc.sasc.biopet.extensions.{Cat, Curl, Zcat}
import nl.lumc.sasc.biopet.core.{ BiopetQScript, PipelineCommand }
import nl.lumc.sasc.biopet.extensions.{ Cat, Curl, Zcat }
import nl.lumc.sasc.biopet.extensions.tools.DownloadNcbiAssembly
import nl.lumc.sasc.biopet.utils.ConfigUtils
import nl.lumc.sasc.biopet.utils.config.Configurable
......
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