Changes from review

docs/pipelines/shiva.md

@@ -82,7 +82,6 @@ At this moment the following variant callers can be used
 
 | ConfigName | Tool | Description |
 | ---------- | ---- | ----------- |
-
 | haplotypecaller_gvcf | <a href="https://www.broadinstitute.org/gatk/gatkdocs/org_broadinstitute_gatk_tools_walkers_haplotypecaller_HaplotypeCaller.php">haplotypecaller</a> | Running HaplotypeCaller in gvcf mode |
 | haplotypecaller_allele | <a href="https://www.broadinstitute.org/gatk/gatkdocs/org_broadinstitute_gatk_tools_walkers_haplotypecaller_HaplotypeCaller.php">haplotypecaller</a> | Only genotype a given list of alleles with HaplotypeCaller |
 | unifiedgenotyper_allele | <a href="https://www.broadinstitute.org/gatk/gatkdocs/org_broadinstitute_gatk_tools_walkers_genotyper_UnifiedGenotyper.php">unifiedgenotyper</a> | Only genotype a given list of alleles with UnifiedGenotyper |
@@ -220,6 +219,7 @@ shiva:
 sv_callers:
 - breakdancer
 - delly
+- clever
 pysvtools:
   flanking: 100
 ```

docs/pipelines/yamsvp.md

-# Introduction
-
-# Invocation
-
-# Example
-Note that one should first create the appropriate [configs](../general/config.md).
-
-# Testcase A
-
-# Testcase B
-
-# Examine results
-
-## Result files
-
-## Best practice
-
-# References