From d8464ae3221f853ac909ddbb50f6a342d3b29aaf Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Mon, 16 Feb 2015 19:34:32 +0100
Subject: [PATCH] Fix output dirs
---
.../main/scala/nl/lumc/sasc/biopet/scripts/CoverageStats.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/scripts/CoverageStats.scala b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/scripts/CoverageStats.scala
index 9d2ef27b0..80704ef77 100644
--- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/scripts/CoverageStats.scala
+++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/scripts/CoverageStats.scala
@@ -39,7 +39,7 @@ class CoverageStats(val root: Configurable) extends PythonCommandLineFunction {
}
object CoverageStats {
- def apply(root: Configurable, input: File, outputDir: String): CoverageStats = {
+ def apply(root: Configurable, input: File, outputDir: File): CoverageStats = {
val coverageStats = new CoverageStats(root)
coverageStats.input = input
coverageStats.output = new File(outputDir, input.getName + ".stats")
--
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