Fixing summary in Basty

d7ef6f44 · pjvan_thof · 03c4d7d7 · d7ef6f44
Commit d7ef6f44 authored Jul 21, 2017 by pjvan_thof
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Showing with 2 additions and 4 deletions

basty/src/main/scala/nl/lumc/sasc/biopet/pipelines/basty/Basty.scala ...ain/scala/nl/lumc/sasc/biopet/pipelines/basty/Basty.scala +2 -4

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--- a/basty/src/main/scala/nl/lumc/sasc/biopet/pipelines/basty/Basty.scala
+++ b/basty/src/main/scala/nl/lumc/sasc/biopet/pipelines/basty/Basty.scala
@@ -87,17 +87,15 @@ class Basty(val parent: Configurable) extends QScript with MultiSampleQScript {

  def init() {
    shiva.outputDir = outputDir
-    shiva.init()
  }

  def biopetScript() {
-    shiva.biopetScript()
-    addAll(shiva.functions)
-    addSummaryQScript(shiva)
+    add(shiva)

    inputFiles :::= shiva.inputFiles

    addSamplesJobs()
+    addSummaryJobs()
  }

  def addMultiSampleJobs(): Unit = {