From d6272ab28dc226b9177bce0ad1ab42dd544cbcbe Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Thu, 15 Oct 2015 15:18:20 +0200
Subject: [PATCH] Added jobs to pipejobs
---
.../nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala | 1 +
1 file changed, 1 insertion(+)
diff --git a/public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala b/public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala
index e53c55cc5..9182b3141 100644
--- a/public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala
+++ b/public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala
@@ -214,6 +214,7 @@ class Flexiprep(val root: Configurable) extends QScript with SummaryQScript with
qcCmdR2.beforeCmd()
fqSync.beforeCmd()
commands = qcCmdR1.jobs ::: qcCmdR2.jobs ::: fqSync :: Nil
+ commands.foreach(addPipeJob)
super.beforeCmd()
}
}
--
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